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Photogrammetry is an emerging tool that allows scientists to measure important habitat characteristics of coral reefs at multiple spatial scales. However, the ecological benefits of using photogrammetry to measure reef habitat have rarely been assessed through direct comparison to traditional methods, especially in settings where manual measurements are more feasible and affordable. Here, we applied multiple methods to measure coral colonies (Pocillopora spp.) and asked whether photogrammetric or manual observations better describe short-term colony growth and links between colony size and the biodiversity of coral-dwelling fishes and invertebrates. Using photogrammetry, we measured patterns in changes in coral volume that were otherwise obscured by high variation from manual measurements. Additionally, we found that photogrammetry-based estimates of colony skeletal volume best predicted the abundance and richness of animals living within the coral. This study highlights that photogrammetry can improve descriptions of coral colony size, growth, and associated biodiversity compared to manual measurements.